Showing posts with label cost savings. Show all posts
Showing posts with label cost savings. Show all posts

Thursday, May 26, 2011

Kinases & Phophatases

The list associated with the DRSC Kinases & Phosphatases library has been updated.

The downloadable spreadsheet now indicates which genes encode known or predicted kinases, and which encode known or predicted phosphatases. The new list also shows the updated FlyBase IDs (FBgn Numbers) and gene symbols, along with the IDs and symbols that appeared on the older version of the list. The library has close to 3 unique reagents per gene.

On the assay plates themselves, the two categories are mixed up together so it's not possible to screen just kinases or just phosphatases (we get asked that fairly often).

Thursday, March 24, 2011

A year of assays for free?

Looks like a 1,000-word essay could win you free access to an Acumen laser scanning cytometer for a year. Here's hoping a Drosophila researcher gets picked!

Wednesday, May 20, 2009

Web Wednesday: Image Analysis


Today's Web Wednesday feature, CellProfiler. 

It's a freely available, open-source software suite for high-throughput image analysis. 

Associated Carpenter et al. (2006) paper at Genome Biology.

Tuesday, March 17, 2009

Transfection

The DRSC Protocols Pages describe our current methods for things like cell culture, transfection, dsRNA production and setting up a 384-well format screen. 

Today I'm thinking most about transfection. As with any protocol, I'm interested in two things. How to do it well. And how to do it well cheaply--particularly important when you're doing things at high-throughput scale as researchers do here for whole-genome screens.

Based on experience, we've been using Qiagen Effectene as a transfection reagent.  Some visiting screeners use a reagent from Invitrogen. And I recently got a protocol from the folks at Genesee Scientific for FectoFly (made in Europe by PolyPlus).

Have feedback? Experience? Favorites? We are interested to hear about it. So we can provide the best advice on the DRSC website and to visiting researchers.


Tuesday, December 16, 2008

Technology Tid-Bits: Very Simple tips for Cost Savings

In a full-genome RNAi screen, in essence thousands of individual experiments are done. Typically, each of these sits in a small well in one of the many 384-well microtiter plates necessary for the full screen.

Why 384-well plate format? One reason is cost savings. 

Working in small volumes (as these plates require), the total amount of reagents and cell culture media needed to do the full-genome screen is much less.  And subsequently, the screen costs less.

Many labs have gotten very good at finding additional routes to cost savings. Stretching grant dollars further and further.  And perhaps with the hard economic times so prominent in the media these days, the issue has been on my mind recently.

So, "use less" is one straightforward way to save costs.  

Another way? Dilute, dilute, dilute.

At the DRSC, we have recently been encouraging researchers to include tests of a minimal effective dilution--particularly of the readout reagents (antibodies, solutions, etc.)--as part of routine optimization for 384-well format.  Even if the minimum you can get away with is a one-to-one dilution, that still means you've cut your costs for that step or reagent in half.

More ideas?  Pipe(tte) up!  Want to hear them.